rs220067231 SNP Detail

Summary

• ID
  rs220067231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106398417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTCAGG CAGAGAAGGT
  CTATAGACTG CTTTTTCTTC ACCATGTGCT AAGTCATGTT TTTCTCACAG TCTTGCTATG
  ACTGTTAAGC TGGCTTTGAA CTCTCCAAAT CTTCCTGTCT CTGCCTCTTG AGTGTGCAGG
  TGACAGGAAT GTGATGCCTT ACGCTGCCTC ACCCCTGTCA TACCCCTGCC TTGCCCTTGT
  Y
  ACACCCCTGC CACACCCCTG CCTAGCCTTT GTCACACCCC TGCCTCACCC CTGTCACACC
  CTTGCCTCAC CCCTGCCGAG CCCTTGTCAC ACCCCTGCCT CACCCCTGTC ACACCCTTGC
  CTCACCCCTG CCTAGCCCTT GTCACACCCT TGCCTCACCC CTGTCACACC CGTGCCTCAC
  CCCTGCCGAG CCCTTGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323839357	CHEV_11_106368905	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220067231					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106398417 () rs orientation: forward

Symbol	Name	Function Class
Gm17925	predicted gene, 17925	1593 bp upstream
Rr231251	regulatory region 231251	1017 bp distal
Rr238695	regulatory region 238695	417 bp distal
Rr242844	regulatory region 242844	1048 bp distal
Rr248128	regulatory region 248128	within coordinates
Tex2	testis expressed gene 2	within coordinates
Tssr111356	transcription start site region 111356	485 bp upstream