rs220073162 SNP Detail

Summary

• ID
  rs220073162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79518178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGCAGGC GCATTCGAGG
  CCCGGCGGCT GCGGCGCGCA GGCGCGTTAG GCGCGGGCCG GGCCGGGCCG AAGCGAGCGC
  CGGGCGGGCA GCGGCGCCAG AGCGAGTGGA GCCTTCGGGG TCCCCGGGTG GCGGCGGCGG
  CGGCGGTGCA GAGGAGGAAG GCGGCGGCTC TCCCCCTGCC GGCGCGCGAC CCGGTCCGTC
  Y
  CGCGAGCTCG CGCCGGTCCC GCGGCCCGGC CCGGCCCCGG GCCCCTCCGT CGCCGCCGCC
  GCCACCGCCA TGGCCCGGCC GCTGGTGCCA AGCTCGCAGA AGGCGCTGCT GCTGGAACTG
  AAGGGGCTGC AGGAGGAGCC GGTGGAGGGC TTCCGGGTGA CGCTGGTGGA CGAGGGTGAC
  CTGTACAACT GGGAGGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381007690	MGP_WTSI_10_79145089	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220073162					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381007690	MGP_WTSI_10_79145089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79518178 () rs orientation: forward

Symbol	Name	Function Class
Cdc34	cell division cycle 34	within coordinates
Cpgi1800	CpG island 1800	within coordinates
Gm67172	predicted gene, 67172	591 bp downstream
Rr402019	regulatory region 402019	389 bp downstream
Rr434866	regulatory region 434866	1435 bp distal
Rr434867	regulatory region 434867	748 bp distal
Rr434868	regulatory region 434868	within coordinates
Rr434869	regulatory region 434869	71 bp proximal
Rr434870	regulatory region 434870	1148 bp proximal
Tssr3269	transcription start site region 3269	1304 bp downstream
Tssr3270	transcription start site region 3270	511 bp downstream
Tssr94367	transcription start site region 94367	531 bp downstream
Tssr94368	transcription start site region 94368	183 bp downstream
Tssr94369	transcription start site region 94369	114 bp downstream
Tssr94370	transcription start site region 94370	97 bp downstream
Tssr94371	transcription start site region 94371	22 bp downstream
Tssr94372	transcription start site region 94372	26 bp upstream