rs220074184 SNP Detail

Summary

• ID
  rs220074184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCGGAA TCAAACCCAG
  GAGGTGAGAT GTAAGGGATG GAGCAAGTTA CTTTCCTAAG TGAGCGGTCT CACTGGCTTT
  GTTGAATTTT GAAGGCAGTC TCACTCTGTA GCCTAGGCTG ACCTTGAACT TTAGGCTAAC
  CTATCACATG GGCTTCATAT GTGGGATTAT AGGCACGAAC CTAGTTGTTC ATAGGCGGGT
  R
  CCTTTTCTCC CTGCAAGGAC TTTGGCATCT TGTTCTTGAG TCTTCAGATT TGCCTCTCCA
  CCCCCGTTCC CAACTCTCTG GTCTAACTCC CCACTCCAAG TCAGCTCTGC TACCTCATAT
  CAACACTCCA CGGAGCCCAC AGTTCTCACC TGCACTGTAG CAGCTATTGT AGGCACGGTC
  AGGATCAGAA GGCATACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788714	MGP_WTSI_11_69497206	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220074184					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788714	MGP_WTSI_11_69497206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1411 bp distal
Rr450067	regulatory region 450067	1869 bp distal
Rr450068	regulatory region 450068	1646 bp distal
Rr450069	regulatory region 450069	1130 bp distal
Rr450070	regulatory region 450070	741 bp distal
Rr450071	regulatory region 450071	129 bp proximal
Rr450072	regulatory region 450072	1545 bp proximal
Rr450073	regulatory region 450073	1840 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1620 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	619 bp upstream
Tssr102520	transcription start site region 102520	651 bp upstream
Tssr102521	transcription start site region 102521	692 bp upstream
Tssr102522	transcription start site region 102522	785 bp upstream
Tssr102523	transcription start site region 102523	847 bp upstream
Tssr108774	transcription start site region 108774	1900 bp upstream
Tssr108775	transcription start site region 108775	1848 bp upstream
Tssr108776	transcription start site region 108776	1808 bp upstream
Tssr108777	transcription start site region 108777	1751 bp upstream
Tssr108778	transcription start site region 108778	1723 bp upstream
Tssr108779	transcription start site region 108779	1699 bp upstream
Tssr108780	transcription start site region 108780	1625 bp upstream
Tssr108781	transcription start site region 108781	1571 bp downstream
Tssr108782	transcription start site region 108782	1633 bp downstream
Tssr108783	transcription start site region 108783	1816 bp downstream
Tssr108784	transcription start site region 108784	1833 bp downstream