rs220074402 SNP Detail

Summary

• ID
  rs220074402
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:149708714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTATGG CCTCATTTCT
  TCTCACTTTT GGAATGGTTA TATATATTTT TGTGCCATTG TATGTTGAAT GGGTGTATTA
  TTTTTTATTT TATAAGGAGT TATATATAAT ATGTGTGTAT ATATATGTAT GCATACATTA
  TGTATATATG TATATATAAT AAATGGGCAT ATATAAAAAT ATGTATTATA ATATAATATA
  A
  ATATAATACA TACAATAAAT ATATAATAAA TATTTATGTT TATTAATAAG TAATATATCT
  ATATAATATG TATATATAAC AAATAATATA TATGTATTAA GATATTGCCT TAAATCTAAG
  AAAAGGACTT TGGGCTCTTA ATAAGTGTTG AGACTGTAAA AGACTATGCA GACTTTGGAT
  GTTAGATTAA TGCAATTTGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss356107979	MGP_WTSI_2_149692530	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs220074402					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356107979	MGP_WTSI_2_149692530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149708714 () rs orientation: forward

Symbol	Name	Function Class
Gm18167	predicted gene, 18167	713 bp upstream
Syndig1	synapse differentiation inducing 1	within coordinates