rs220075990 SNP Detail

Summary

• ID
  rs220075990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46990468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGATTGGA AAGAGGAAAG
  AAAGCAAAAA TACCTTTGGG CAGGACAAGA GAAAGCCCCA AAGATGAGAG GGGCCACGGC
  TTTGTAAAGA CAGCCGGCCA GCCTAGTGAT AACAGGTATA TCTGAGAGCT CTTTCAGGCA
  AATCTTTTTG CAACTAGCGA TGCCTTTGCC AGGAGACATC TGCTGGGTTT GGGTGATCAT
  Y
  CACTTCCTGT TCAAAAATCC TTGGCAGGGA GGAAAAACCT CGGGGGTGGG GTGGGTGCAC
  CTCAAGCAAA GGAGGTTCCC TTCAAGGGGA CAGACGCAGC TTTCATGAAT CAACTGCCCC
  CACAACCTTT CACTGTATAC TTTAAGTAGC CATCTCTCTC AATGTGAAAC AGCAGCAGCC
  AAAAGTTAAA CTGTTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398326236	MGP_WTSI_17_46816491	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220075990					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326236	MGP_WTSI_17_46816491	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46990468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	912 bp proximal
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	1247 bp upstream
Rr527794	regulatory region 527794	193 bp distal
Rr527795	regulatory region 527795	448 bp proximal
Tssr5136	transcription start site region 5136	1234 bp downstream
Tssr5137	transcription start site region 5137	1393 bp downstream
Tssr144870	transcription start site region 144870	749 bp downstream
Tssr144871	transcription start site region 144871	715 bp downstream
Tssr144872	transcription start site region 144872	882 bp upstream
Tssr144873	transcription start site region 144873	1438 bp upstream
Tssr144874	transcription start site region 144874	1496 bp upstream
Tssr148364	transcription start site region 148364	960 bp upstream
Tssr148365	transcription start site region 148365	920 bp upstream
Tssr148366	transcription start site region 148366	898 bp upstream
Tssr148367	transcription start site region 148367	1184 bp downstream
Tssr148368	transcription start site region 148368	1207 bp downstream
Tssr148369	transcription start site region 148369	1222 bp downstream
Tssr148370	transcription start site region 148370	1244 bp downstream
Tssr148371	transcription start site region 148371	1305 bp downstream
Tssr148372	transcription start site region 148372	1328 bp downstream