rs220076869 SNP Detail

Summary

• ID
  rs220076869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGGCGC CCCCAGGTCT
  GGCCCGTCGC CACACGGCGG CGGGCGTGGC GAGGGCGGCC CCAGACAGCC GGCTGAGCGA
  CTCGAGGAAG GAAGGAGGGC GGCGGGGGTG GGGCCGAGGG AACATCCTGT CTGAGCCGGG
  CACCGCAGAC AGCGCCGTGC GCCAGCCGCC CAGACGGCGC GCCGGGCCAG CAGCGCGGGG
  Y
  ACGCGCGAGG GGGGCGGGGG AGCGGGAGCA CGCGCGTGCG CGGCCGAGGC GCCAGGCGCG
  CGCCCCGGTC GGGGCTGGGG ACGCGCGCGC AGCCTGCAGT GTGCAGCCCG CCGGGAGCCA
  CAATAGGCCA GACGGCGCGC GCGCCCGAGG GGCTGGCTGG CGCGGGGCCG CGCGGCGCCG
  CTGGCTTCGT TCCCTCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433260	MGP_WTSI_3_30993676	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220076869					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433260	MGP_WTSI_3_30993676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	753 bp downstream
Rr397631	regulatory region 397631	937 bp downstream
Skil	SKI-like	356 bp upstream
Tssr28706	transcription start site region 28706	847 bp downstream
Tssr28707	transcription start site region 28707	704 bp downstream
Tssr28708	transcription start site region 28708	66 bp downstream
Tssr28709	transcription start site region 28709	42 bp downstream
Tssr28710	transcription start site region 28710	25 bp downstream
Tssr28711	transcription start site region 28711	183 bp upstream
Tssr28712	transcription start site region 28712	207 bp upstream
Tssr28713	transcription start site region 28713	298 bp upstream
Tssr28714	transcription start site region 28714	1143 bp upstream
Tssr28715	transcription start site region 28715	1620 bp upstream
Tssr32911	transcription start site region 32911	1073 bp downstream