rs220079288 SNP Detail

Summary

• ID
  rs220079288
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCCTAC CTGTGGTGAG
  CCCTGTTTCT ATGCAGTAAC CAGTCCCGCC TCCCTTCTTT GTGTCTCTAT CTTCCCCCGA
  GTCCGGAGTG GGTTGGGGGA TAGGCGACTC CTTCTGGGTC CACACTTTGG CAACACCTCT
  TTGGGCCTCC TAGACAGAGC CACAAGGTGA GTAAGGTCCG CCTTACTGAG ACTTGCCACT
  S
  GCCTGCTCTG CAGCCATGCT CTCCAACAAA AACTGGTCCC GGGGGCTGGC GAGATGGCTC
  AGCGGGTAAG ATGACTGCTC TTCCGAAGGT CCTGAGTTCA AATCCCAGCA ACCACGTGGT
  GGCTCACAAC CACCCGTAAT GAGATCTGAC GCCCCCTTCT GGTGCGTCTG AAGACAGCTA
  CAGTACTTAT GTATAATAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170096	CHEV_12_113913949	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220079288					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642172 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	906 bp upstream
Cpgi5173	CpG island 5173	829 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	199 bp downstream
Rr473553	regulatory region 473553	1473 bp distal
Rr473554	regulatory region 473554	1317 bp distal
Rr473555	regulatory region 473555	1338 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	735 bp distal
Rr473558	regulatory region 473558	270 bp distal
Rr473559	regulatory region 473559	79 bp distal
Rr473560	regulatory region 473560	146 bp proximal
Tssr115391	transcription start site region 115391	1315 bp downstream
Tssr117877	transcription start site region 117877	1711 bp upstream
Tssr117878	transcription start site region 117878	1652 bp upstream
Tssr117879	transcription start site region 117879	1463 bp upstream
Tssr117880	transcription start site region 117880	1371 bp upstream
Tssr117881	transcription start site region 117881	1353 bp upstream
Tssr117882	transcription start site region 117882	974 bp upstream
Tssr117883	transcription start site region 117883	924 bp upstream
Tssr117884	transcription start site region 117884	901 bp upstream