rs220081395 SNP Detail

Summary

• ID
  rs220081395
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79756677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGTTCC GAGATGCTGC
  TGAAGCTAAA AGTGAAGGAG AAAGAAGCAA CTAAAAATAT CCCCCCCGGG GCCGCCGGGC
  TCCTTGAATG CAGGGGAGAG GGGGCAGGGG AGAAGGCGTG GGGCGGGGTG GCGGGAGGAG
  GGGACGCGGG AGGCGCCGGA GGGAGGGGTC GGGGGAGACG GAGGGTCAGT TTCTCCTCTT
  S
  CCCCCTCCCG CCCCCCCCCT GCTCAGCTCC CCTCTCCGGG GCGGCTTGGC GCTGCTCGGA
  GCCCGATCCT GCAAAACCCG GGCTGGGGGC GGGAGCGGAG CCGGAGCGCC TGCCCGCGCG
  GGTGTCAGGC CGACGTGGTC GGTCACCTGA AGTTCACGGA GGGTGGGGGA AGGGTTAAGG
  TTATGGTGTC TCGGGTTATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375274862	MGP_WTSI_8_81553947	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220081395					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375274862	MGP_WTSI_8_81553947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79756677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	1619 bp distal
Cpgi20620	CpG island 20620	within coordinates
Gm63940	predicted gene, 63940	within coordinates
Rr400985	regulatory region 400985	1441 bp downstream
Rr665784	regulatory region 665784	1451 bp distal
Rr665785	regulatory region 665785	940 bp distal
Rr665786	regulatory region 665786	61 bp proximal
Tssr2612	transcription start site region 2612	1682 bp downstream
Tssr78124	transcription start site region 78124	1811 bp downstream
Tssr78125	transcription start site region 78125	1739 bp downstream
Tssr78126	transcription start site region 78126	1698 bp downstream
Tssr78127	transcription start site region 78127	1435 bp downstream
Tssr78128	transcription start site region 78128	1394 bp downstream
Zfp827	zinc finger protein 827	within coordinates