rs220082332 SNP Detail

Summary

• ID
  rs220082332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7677609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTCATC TCTATTAGTT
  CTAGCTACAA ATGGATTCCA GCCTCTGTCA ATTCTGTTCT TGTCCACTTT AAATCCTTAC
  TTATTTAAAA CTAATGCAAG CCTATTAGAT TTGATCAGGG AGCTAAGAAT TTGTACTCAT
  GGGTACTTAA AGTTCTGCCT CCCTTAAGTA GCAAATATAT AGAAGGAAAA TAAAATCTGG
  M
  CTTTTGCAAT CTCAGCCGCA GGACTTGGGT TCCCAGCAAA CAAGTCAACT TACAGCCTGG
  ATCGGAAACT CCCAGACTTA CTGCGGGGAG AAGAGGGGGT TTTCCAATGA TCTGTCCTTT
  AGGGTTTAAA AGCGCATCCT GGGAGCGACT CTTTCATTCT CCATGAAGTT CTGAGCTGCG
  AGAGCCCAGC AACGCCCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356879304	MGP_WTSI_3_7612549	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220082332					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356879304	MGP_WTSI_3_7612549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7677609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	152 bp proximal
Gm16685	predicted gene, 16685	156 bp upstream
Il7	interleukin 7	within coordinates
Rr77757	regulatory region 77757	within coordinates
Tssr28303	transcription start site region 28303	153 bp upstream
Tssr28304	transcription start site region 28304	1322 bp upstream
Tssr32541	transcription start site region 32541	1028 bp downstream
Tssr32542	transcription start site region 32542	1093 bp downstream
Tssr32543	transcription start site region 32543	1145 bp downstream
Tssr32544	transcription start site region 32544	1176 bp downstream
Tssr32545	transcription start site region 32545	1189 bp downstream
Tssr32546	transcription start site region 32546	1222 bp downstream