rs220082517 SNP Detail

Summary

• ID
  rs220082517
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78714276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGTTAGCG TCACTGTGCT GCAGAAAGCA
  ACACAAGACC AAAGTCCTGG AACACCAGAC TCGATCCTGT AGCTCGCGTG CTGTGACTAC
  TCCTGGTTTG CCTTTCCCCT CATACTCCTT TTTATAAAAA CCTCGAGTCC CTGTTCATCC
  A
  CTTCTCCCAC CCAGCAATTA CAGAAGAAAA GACACTAGAT GCCTGAGATC TCACATAACC
  TTTTACACCC GATATTTTCA CTGTCTTACT AACAACCCTC TCTAGTAGTC AGCAAGGGCT
  ATGTTTTGCA ACACCCCAGG GTGGCAAAGA                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757657	CHEV_11_78636952	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220082517					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78714276 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm78	DNA segment, Chr 11, Boehm 78	within coordinates
D11Bhm79	DNA segment, Chr 11, Boehm 79	1038 bp proximal
Gm23219	predicted gene, 23219	937 bp upstream