rs220085777 SNP Detail

Summary

• ID
  rs220085777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAATCAA AACTGAAACC
  AAACGGGGAG AAAAAAAGCA TTATAAATGA AAGTTAACTC TAAAGAAGGG AACGGCCACG
  TGGAAAAGAG AGATGTAAGG CACCTATATG GCCCTTGCCT AGAGACTTCT CCAAGAGGCC
  ATGGGGTCTA CACTCACGGT CCTCTTCTCC TCGAGGACTA ACAGTAATGC AGAGCCAAGT
  Y
  AAGGCCTCCA GTATCCCCTT GGCCAGAGAC TCAGAATTCC AGGTCCCCAT GTGCCCCTCT
  AGGAAAAAGC AGGACCCTTA AGCACCTACT TCCAGGAAGA CCAAGTAATG ACACTCTTCA
  AGGTCAGCCC CTCCCATTCA GAGTCTAAGT TAGCTCTGCG GCTTCACCCG GGACTCCGGG
  GACTGTGGGC GGGGCTCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906840	MGP_WTSI_7_31206493	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220085777					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906840	MGP_WTSI_7_31206493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	1620 bp proximal
Hcst	hematopoietic cell signal transducer	1620 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	258 bp upstream
Rr368301	regulatory region 368301	1532 bp downstream
Rr400239	regulatory region 400239	79 bp upstream
Rr400240	regulatory region 400240	658 bp upstream
Rr644812	regulatory region 644812	1802 bp distal
Rr644813	regulatory region 644813	1130 bp distal
Rr644814	regulatory region 644814	within coordinates
Rr644815	regulatory region 644815	442 bp proximal
Rr644816	regulatory region 644816	1311 bp proximal
Tssr2184	transcription start site region 2184	1870 bp upstream
Tssr65711	transcription start site region 65711	1809 bp downstream
Tssr65712	transcription start site region 65712	1782 bp downstream
Tssr65713	transcription start site region 65713	1525 bp downstream
Tssr65714	transcription start site region 65714	250 bp upstream
Tssr65715	transcription start site region 65715	798 bp upstream
Tssr65716	transcription start site region 65716	915 bp upstream
Tssr65717	transcription start site region 65717	959 bp upstream
Tssr65718	transcription start site region 65718	987 bp upstream
Tssr65719	transcription start site region 65719	1792 bp upstream
Tssr65720	transcription start site region 65720	1831 bp upstream
Tssr65721	transcription start site region 65721	1888 bp upstream
Tssr65722	transcription start site region 65722	1907 bp upstream
Tssr65723	transcription start site region 65723	1938 bp upstream
Tssr65724	transcription start site region 65724	1954 bp upstream
Tssr71741	transcription start site region 71741	1698 bp upstream
Tssr71742	transcription start site region 71742	1602 bp upstream
Tssr71743	transcription start site region 71743	1112 bp upstream
Tssr71744	transcription start site region 71744	1101 bp upstream
Tssr71745	transcription start site region 71745	134 bp downstream