rs220090604 SNP Detail

Summary

• ID
  rs220090604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:101075358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGCTTCA TTGTCTACAC
  ATCCACAGTG TACTGCAGAC ACACACAGTT GTTGCCATAT AAAAATGGAA ACTGCTAAGA
  TGGTTCAGTG GATAAAGGCA TTTGCCACAC ACTCCTGGTG ACCAGAGTTT GATCCCCAGG
  GCCTACATAA AGGGGGAAGA AAGAACTGAC TTTGTAAAGT TGTTCTCTGA TTTCTACATG
  Y
  ATGTTATGAC ATGTGTGCTC ACATACATCA TACACACACT AATAAATATA GTAAAAATAC
  TCTGCTTTTA CAAATGTCAA GATCCATATT CTTTCAGACA AACATTCATA ATTATCGTAA
  TAAAATCTAC TGATTTAAAC TTAAAAAAAT AAGTTTTCTA CAGGAATTCT TGCTTTCTAC
  TATGCTTGAT AAATATTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323148487	CHEV_9_101100489	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220090604					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101075358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67595	predicted gene, 67595			within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha			Intron
				Noncoding-Transcript-Variant
Rr685595	regulatory region 685595			904 bp proximal
Tssr91107	transcription start site region 91107			781 bp downstream
Tssr91108	transcription start site region 91108			817 bp downstream
Tssr91109	transcription start site region 91109			840 bp downstream
Tssr91110	transcription start site region 91110			922 bp downstream