rs220091082 SNP Detail

Summary

• ID
  rs220091082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGCACGT GCGGCCGTAG CAGGCGGCTG
  GCTCCCAGGC CAAGGTAGCG CGAAGGGATC CGGCGGCGGC CGTCTGTCGG CTAGAGCGCC
  ACCTACCGGG AAGAGAGCGC ACTGCCGAGG CGCCGACCTT GCCCCAGTGG CCGCTCTAGT
  R
  GGACAGGTGC GACCCAGAGA GCAGAGCTGA CCTCCACTGG AAGGATGTTG GATGGGCTTG
  ACTATGACTA CGAGCATTTC TTTCCCTGAA ATGAACAGAA AGCTCAGTTT GGGCCAGGGG
  AAGCTCTTCT CTGGATAGTT GAGTAGGATG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323056333	CHEV_9_86358633	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220091082					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	within coordinates
Cpgi22102	CpG island 22102	1891 bp proximal
Rr684095	regulatory region 684095	87 bp distal
Rr684096	regulatory region 684096	within coordinates
Rr684097	regulatory region 684097	47 bp distal
Rr684098	regulatory region 684098	1638 bp proximal
Tssr90780	transcription start site region 90780	83 bp upstream
Tssr90781	transcription start site region 90781	68 bp upstream
Ube3d	ubiquitin protein ligase E3D	76 bp upstream