rs220092678 SNP Detail

Summary

• ID
  rs220092678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81822230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGAGG GAGAGCGGGA
  CTGAGAACAA TAATAAATCC AGAGTGTGAA CTGCTGCATC CGCTGGGGCT GGGGGAGGGG
  AGAAGGAAGT GTGCCTGGTA GGAGGTGGGC ACCCTCTTCT CCGACAGCCT GGCACTGGCT
  CGCTTAGATG CCATCCAGTC AGGGCCTTTC CCTGGGAAGG ATGGGAGTGA GGAGGTGGGG
  R
  TGGAGGGTGG GAGTGGGGGT TGGGGGGAGC TCTTTCCCAA ATTCAACTCC ATCCCAGAGG
  TCTCTGGACA TGAATGCCCA GGTTCTGGGT GTCTCCTCCC GTCCTTACCC CACACTGCAT
  TTTCCCAAAA CATCTATTTG CCTATCCTTG TCTCTCCAGC CCCACCTTGA CAAAACTAGT
  GCAAACAGAA GCTAGTGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394729771	MGP_WTSI_15_81768459	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220092678					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394729771	MGP_WTSI_15_81768459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81822230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7402	CpG island 7402	935 bp distal
Csdc2	cold shock domain containing C2, RNA binding	within coordinates
Gm62067	predicted gene, 62067	1321 bp upstream
Rr506350	regulatory region 506350	1332 bp distal
Rr506351	regulatory region 506351	1260 bp distal
Rr506352	regulatory region 506352	within coordinates
Rr506353	regulatory region 506353	419 bp proximal
Rr506354	regulatory region 506354	1841 bp proximal
Tssr132315	transcription start site region 132315	1190 bp downstream
Tssr132316	transcription start site region 132316	1155 bp downstream
Tssr132317	transcription start site region 132317	1129 bp downstream
Tssr132318	transcription start site region 132318	1095 bp downstream
Tssr135513	transcription start site region 135513	1313 bp upstream