rs220096663 SNP Detail

Summary

• ID
  rs220096663
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32341832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGGGTA ATAGGCAAGC
  AGAAAGCCTT GTGTCCAATT CCCATTCAGA AGCTCTATTT AGACTGCGGA ATGATGAGGC
  TGAGAGGAGC GTTGTGTAAG GAGAGATCGT AGCTAACAGT GGAAATGAAA TGTATATGAG
  GGTAACTGTG GACTGAAGTT AGAAAACACA GCACCATTGA ATAAAATGAA AATTTAACGG
  K
  CTGACGACTC GAAACCGAGA ACACGAATCA AAATCAGGAG GCTAAGCTTT AGGAGTCTTC
  TAAACTGCCA ATAAAACAAC TGAATTTTAC AACGTAATAG TCGCGACACG AACTGAACGA
  CAGTCTGCTT TTCCAATGGA AGTGAATAAT GTCCGTGTGG GCGGACATCC TGAAGCGACA
  GACAAGACTT TAGACCAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353557746	MGP_WTSI_2_32307340	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220096663					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353557746	MGP_WTSI_2_32307340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32341832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11510	CpG island 11510	within coordinates
Naif1	nuclear apoptosis inducing factor 1	within coordinates
Rr396886	regulatory region 396886	138 bp downstream
Rr396887	regulatory region 396887	124 bp upstream
Slc25a25	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	375 bp upstream
Tssr17282	transcription start site region 17282	1358 bp downstream
Tssr17283	transcription start site region 17283	730 bp downstream
Tssr17284	transcription start site region 17284	354 bp upstream
Tssr17285	transcription start site region 17285	488 bp upstream
Tssr23522	transcription start site region 23522	441 bp upstream
Tssr23523	transcription start site region 23523	350 bp upstream
Tssr23524	transcription start site region 23524	1364 bp downstream