rs220101431 SNP Detail

Summary

• ID
  rs220101431
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120605063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGGCCA GACTAGGGTA
  TGTGCAACGC GTATACTTGC TCTTCTAGGC CAGTGTTCTG CTGCGCTCCA ACTCTATCTC
  CAAACCCCTT CCTCGAGCCA TTCCAACCTC CTTTCTATTC CACATTTCTA GGCCTCCCCT
  TATATAGGGC CAGCTCAGCT CATCTCCGCG TACACGCCCT AGGGAAAGGG GCTCCCAGCC
  W
  TCGGCCTAGC AAGCTAATGT GTATCCTGTC TCCAGGGGCA TGCTTGCGAG GCTCCGTCAG
  CATTCGGGGA CATGGAGGAG TTCCGGCGCT CCTACAACCG CCTCTGCGAG GAGAGTGGGG
  CTGAGCCCCA GGAGGCTGTT CTGCAGCAAC TGCACCAGCT TCCGAAGGGC GGACTGGACC
  TGACTACTCA GAGCCTGACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384948096	MGP_WTSI_11_120575551	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	A	A	A	T	T	T	A	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220101431					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	A	A	A	T	T	T	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384948096	MGP_WTSI_11_120575551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120605063 () rs orientation: forward

Symbol	Name	Function Class
Cenpx	centromere protein X	499 bp upstream
Cpgi4325	CpG island 4325	within coordinates
Lrrc45	leucine rich repeat containing 45	within coordinates
Rr232584	regulatory region 232584	1663 bp distal
Rr246348	regulatory region 246348	within coordinates
Rr403203	regulatory region 403203	279 bp downstream
Tssr106342	transcription start site region 106342	272 bp downstream
Tssr106343	transcription start site region 106343	238 bp downstream
Tssr112369	transcription start site region 112369	489 bp upstream