rs220101453 SNP Detail

Summary

• ID
  rs220101453
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93612029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC CGTCAGCCCG GTCCCCGTCA
  K
  CCCCCAGCCC TCGTCAGCCT CCGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923368027	MGP_WTSI_16_93815141	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	T	G	T	G	T	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220101453					SNP	G	G	G	G	G	G	G	G	G	T	T	G	T	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923368027	MGP_WTSI_16_93815141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93612029 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	771 bp proximal
Rr370142	regulatory region 370142	1250 bp upstream
Tssr142206	transcription start site region 142206	1247 bp downstream