rs220102880 SNP Detail

Summary

• ID
  rs220102880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111503966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTTTAC CAAAAAAAGA
  AGTTTTTTTT TTCTTTTAAA TAATGGAAGA GTGTCTAGGA AAGAAAAAGT CCGGGCTCCT
  CTTCCGAACA TAAATTGTTA GTAAATAAAA CACTGTTGCC TCCTCGGGTG CACCTGCAGG
  GAGTCACAGT CACCAACCAG CCTGGCCTTT ACAGACCGGG CTGGGCTGGA CGGGGTGGCC
  Y
  TACGTGGCGA CTGAGCCCCG AGGCGGGGGG ATGGCCAAAC CTCGAGGCAC AGCCGGACCT
  GACTGGGGTC GAGACCACCC TAAGTTGCGC GGGGACCCAA GCTACACAAA AAAAGGTTTC
  TATCGTGGGA AACCTCAGAG CCACAACCGC GGAGTCTCGG CTCGGCGGCG GCTTGGCTCC
  CCGAGCTCAG GGAGAGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387360253	MGP_WTSI_12_112775743	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220102880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360253	MGP_WTSI_12_112775743	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111503966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	569 bp upstream
Gm56529	predicted gene, 56529	1964 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	484 bp upstream
Gm60631	predicted gene, 60631	987 bp downstream
Rr403512	regulatory region 403512	295 bp upstream
Tssr115316	transcription start site region 115316	1872 bp downstream
Tssr115317	transcription start site region 115317	1486 bp downstream
Tssr115318	transcription start site region 115318	1421 bp downstream
Tssr115319	transcription start site region 115319	327 bp downstream
Tssr115320	transcription start site region 115320	617 bp upstream
Tssr115321	transcription start site region 115321	732 bp upstream
Tssr115322	transcription start site region 115322	799 bp upstream
Tssr115323	transcription start site region 115323	937 bp upstream
Tssr115324	transcription start site region 115324	1253 bp upstream
Tssr115325	transcription start site region 115325	1287 bp upstream
Tssr115326	transcription start site region 115326	1902 bp upstream
Tssr117828	transcription start site region 117828	385 bp downstream
Tssr117829	transcription start site region 117829	1047 bp downstream