rs220105414 SNP Detail

Summary

• ID
  rs220105414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTAAAAC CAGTGATAAC
  AGTCCCTCGC CCCAGAGCAG AGGGCATCGG AGCCATGCCC ATGCCATGAG ATAGTTGTTT
  AACAAATTAG GTCTCCGAAT CAGGGTCTGT GCTTGGTATC AGGAAACTAC ATGGAGACAG
  AAAACACCCA TAAACAGAAT CCTGTCATGG TGGGTGCTGA CTGGAGTAGG TCAATTACTG
  Y
  CACCTCACAT TCAGGGCTGG CCTGATGGCT AAATATGGGA GTTCAAAATC AACGTCCAGG
  ATCCTGCCTC TGCCCCTTTC CAAGCTCCTT AGTGACTTTG TGCTCACGGC TACCGTCTGT
  TGCAACTGTA CAGATGAAAT GAGACATGGA AGTATTTCTT CCATGCAGTG GAGCGGCTGA
  GTGAGCACTG CTGAGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356235716	MGP_WTSI_2_156245253	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220105414					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356235716	MGP_WTSI_2_156245253	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	838 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	1392 bp upstream
Rr47255	regulatory region 47255	1837 bp distal
Rr55936	regulatory region 55936	363 bp proximal
Tssr21155	transcription start site region 21155	809 bp downstream
Tssr21156	transcription start site region 21156	1203 bp upstream
Tssr21157	transcription start site region 21157	1320 bp upstream
Tssr21158	transcription start site region 21158	1521 bp upstream
Tssr21159	transcription start site region 21159	1535 bp upstream
Tssr21160	transcription start site region 21160	1558 bp upstream
Tssr21161	transcription start site region 21161	1566 bp upstream
Tssr21162	transcription start site region 21162	1599 bp upstream
Tssr21163	transcription start site region 21163	1612 bp upstream
Tssr21164	transcription start site region 21164	1645 bp upstream