rs220109263 SNP Detail

Summary

• ID
  rs220109263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175457821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACATCTT CATCTGAAAG
  CTGCTAAAGT CTTCCAGGCA GCTAGGATGA GGGTCTCAAA GCCCACACCC ACCGTGACAC
  ACCTACTCCA ACAAGGCTAC ACCTCCTAAT AGTGCCACTC GCTGGACCAG CATCACACTT
  TTAAACCAAT AAATTCAAGA AAGGGTCATT GGAGCTGGAG AGATGGTTCA GTGGTTAAGC
  R
  CACATGCTGC TCTTGCAAAG GACCCAGTTT GGTTCCCAGC ACCTGTGCAG TGACTTACAA
  CCAGCTGTGG TTCTGGCTCC AGGGGATCCT ACGCTATCTT CAGGACTCTG AAGATACATG
  TGCTGACATA TGAATGCTCT CACACAGCTC GCTACACATA GTTTTATAAT ACAGAAGCAT
  CTTTTTTAAA AAGAGAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352481856	MGP_WTSI_1_177560386	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220109263					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352481856	MGP_WTSI_1_177560386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175457821 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	1938 bp upstream
Rr396618	regulatory region 396618	1563 bp upstream
Tssr10313	transcription start site region 10313	1713 bp upstream
Tssr10314	transcription start site region 10314	1741 bp upstream
Tssr10315	transcription start site region 10315	1760 bp upstream
Tssr10316	transcription start site region 10316	1789 bp upstream
Tssr10317	transcription start site region 10317	1809 bp upstream
Tssr10318	transcription start site region 10318	1841 bp upstream
Tssr10319	transcription start site region 10319	1849 bp upstream
Tssr10320	transcription start site region 10320	1865 bp upstream
Tssr10321	transcription start site region 10321	1886 bp upstream
Tssr10322	transcription start site region 10322	1900 bp upstream
Tssr10323	transcription start site region 10323	1914 bp upstream