rs220111279 SNP Detail

Summary

• ID
  rs220111279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57071055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC CTAACAGGTT AAATGGAAAC
  R
  ACCTGATGCT GCTCTGCCTA CACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss915433660	MGP_WTSI_2_57181043	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs220111279					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915433660	MGP_WTSI_2_57181043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57071055 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	788 bp upstream
BB557941	expressed sequence BB557941	within coordinates
Cpgi11661	CpG island 11661	614 bp proximal
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	1035 bp upstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	1351 bp downstream
Rr396968	regulatory region 396968	936 bp upstream
Rr557184	regulatory region 557184	within coordinates
Rr557185	regulatory region 557185	700 bp proximal
Rr557186	regulatory region 557186	776 bp proximal
Tssr24122	transcription start site region 24122	705 bp downstream