rs220113188 SNP Detail

Summary

• ID
  rs220113188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122820090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCTAAGG CGAGAGCAGA
  AATGTAAGCA TGGGAGTAGT CTCCCTTACA GCAGCAAACA GAAACATATG GAAGCACTTA
  TAGAGCCCAT TATACAAGTA TGTTCTCTGT GGGCAGCCTA GTTTTGGATG AAACTTACTT
  TAAAAGCACA AGAACTACAA AGGGAACGAG CTAGAATTCA GGACCACGAA CAAAATTTAC
  Y
  CTCTGTTGTA TACAACAGCA TCTACTGGCT CACTGTAAAG ATGTTAACAG TATGTAGTAG
  GCAGACTGGC TTCAATGAGG AGTTTTGGAA AACGAAACTG TAGTACAATT AGAATTCTAC
  TATCCATTTC CACCACAAAT CAAGATTTTC CATAGTAGAC ATTGGGCTTA CATCACTGGA
  AAAAGTACTT GAGTCCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382064118	MGP_WTSI_10_122421241	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220113188					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382064118	MGP_WTSI_10_122421241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122820090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2309	CpG island 2309	1054 bp proximal
D630033A02Rik	RIKEN cDNA D630033A02 gene	1221 bp downstream
Gm63655	predicted gene, 63655	889 bp downstream
Mirlet7i	microRNA let7i	1455 bp downstream
Rr402310	regulatory region 402310	737 bp upstream
Rr440468	regulatory region 440468	781 bp distal
Rr440469	regulatory region 440469	within coordinates
Rr440470	regulatory region 440470	1636 bp proximal
Tssr99655	transcription start site region 99655	1839 bp upstream
Tssr99656	transcription start site region 99656	1451 bp downstream
Tssr99657	transcription start site region 99657	1865 bp downstream