rs220122187 SNP Detail

Summary

• ID
  rs220122187
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71061570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAATCCTC CTGCCTCAGC CTCCCTAGCG TTTGCACGAC
  AGGCGTGTGC CACTTAGCCT GGTCTGTGTG CTGTGCACAG AGCCCGGTTT TTTTTTTTTT
  K
  TTTTTTTTTT TATGCATGCC AGCGTTGTAA GGACTGAACC CCAGACCAAG CACGTTTTGT
  TTGTTTTTCT GAAAGTGTTT CTTAACGCGG TAGACAGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss375103095	MGP_WTSI_8_73132819	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs220122187					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375103095	MGP_WTSI_8_73132819	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71061570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	153 bp distal
Cpgi20476	CpG island 20476	86 bp proximal
Cpgi20477	CpG island 20477	1992 bp proximal
Gm45546	predicted gene 45546	1505 bp upstream
Gm63790	predicted gene, 63790	1473 bp upstream
Rr400904	regulatory region 400904	1924 bp upstream
Rr664832	regulatory region 664832	617 bp distal
Rr664833	regulatory region 664833	116 bp distal
Rr664834	regulatory region 664834	468 bp distal
Rr664835	regulatory region 664835	within coordinates
Rr664836	regulatory region 664836	983 bp proximal
Rr664837	regulatory region 664837	1484 bp proximal
Ssbp4	single stranded DNA binding protein 4	486 bp upstream
Tssr77777	transcription start site region 77777	1470 bp upstream
Tssr77778	transcription start site region 77778	1779 bp upstream
Tssr81636	transcription start site region 81636	590 bp upstream