rs220123904 SNP Detail

Summary

• ID
  rs220123904
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48722473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAACTTCAG TTATGTCTTC TCTTAAAAAT ACAAGCAGAG
  GGCTTTATCT ACCTAGCTTT AAACTAACTG TCCTTCCCTC CTTTCATCTC TCTTCCTTCC
  T
  CCCCCCCCCC CCCCACTTTC TGTGCAGTCT CTTAGAATGT CACCTCCCTA GACCCCTTGA
  AACCCTAGTG TTCACAACAG AGAGCCAAGT ATACTTTCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	ZALENDE/EiJ
ss368228432	MGP_WTSI_6_48695538	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ	ZALENDE/EiJ
rs220123904					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368228432	MGP_WTSI_6_48695538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48722473 () rs orientation: forward

Symbol	Name	Function Class
Gimap1	GTPase, IMAP family member 1	1744 bp downstream
Gimap5	GTPase, IMAP family member 5	658 bp upstream
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	1128 bp proximal
Rr146256	regulatory region 146256	1872 bp distal
Rr146257	regulatory region 146257	127 bp proximal
Rr368069	regulatory region 368069	467 bp upstream
Rr399641	regulatory region 399641	956 bp upstream
Tssr56207	transcription start site region 56207	630 bp upstream
Tssr56208	transcription start site region 56208	649 bp upstream
Tssr56209	transcription start site region 56209	684 bp upstream
Tssr56210	transcription start site region 56210	698 bp upstream
Tssr56211	transcription start site region 56211	1168 bp upstream
Tssr60779	transcription start site region 60779	555 bp downstream
Tssr60780	transcription start site region 60780	1962 bp downstream
Tssr60781	transcription start site region 60781	1996 bp downstream