rs220124406 SNP Detail

Summary

• ID
  rs220124406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51365831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGGGC AGTACAGTAG
  ATCTGGCCAA GTTGGTGTGA GCAAAGGAGA GCTATTAGGC TCACCAACTC AGCTACTACC
  CAGGCCCAGA TCCAGGGCTT TGAGTTTGCC CACCCTTACA TCTACCCTAT CTATGGCAGA
  GCACATGAAG GGGCAGGTCC TCCAGAACCA TAGCTGCAAG ATCTCCAGGA CTCATGGCAA
  Y
  AACAGGATAT CCCAGAGGAG TCCCAGTGAG GATCCAGTAT TGATAGTTTA GCAGAAGCCA
  GAGTCCCCAA ACCAGACCAA AGACTCACTG CAATGAACAT CTGCAAGTAA AGATGTTTGG
  ACAAAAGGGT CTACTGTGGC ACATACTGTT ATACACTCTG TGAGATGTTT GTTTTCTTTC
  CGTGGGGAAG GTGCAAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391087206	MGP_WTSI_14_51748049	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220124406					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391087206	MGP_WTSI_14_51748049	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51365831 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	304 bp upstream
Rr491778	regulatory region 491778	within coordinates
Rr491779	regulatory region 491779	399 bp proximal
Tssr125412	transcription start site region 125412	531 bp upstream
Tssr125413	transcription start site region 125413	556 bp upstream
Tssr125414	transcription start site region 125414	606 bp upstream
Tssr125415	transcription start site region 125415	633 bp upstream
Tssr125416	transcription start site region 125416	665 bp upstream
Tssr125417	transcription start site region 125417	681 bp upstream
Tssr125418	transcription start site region 125418	711 bp upstream
Tssr125419	transcription start site region 125419	744 bp upstream