rs220135410 SNP Detail

Summary

• ID
  rs220135410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13303677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGTCTC CCCCACCCCT
  GCCCCGCCCT GCAGAGCAGC TCCTAGAGGG TTGCTCACCT AACACAGAGA CAAGCGAACA
  CTGTTCAGAA CCAGGAGCTT AATTATCTGC CAAGGGCTGC TGTCCCCTAA AGACACTCAG
  GAGAAACATG ACCTGCCCGC TGCCTCTCAG GCTCCAGGTC TTGGGGGAAT ATTAAATCCC
  Y
  GCCTTCAGCA ACAGTGTCAG GTAACACAGG GCTCTAAGAC ACCACCTTCA GGGTTCTTGG
  TACTGGTTTG CTATCAACCC AGGTGGCCTG TCTTTCTACC CCAGCACACT TGGAGCCACG
  AATACGCCAG TCAGTCCTAC CTGTGGTCAG GGCTTCAGCA GTCGCCATGT GCATGATGGT
  GTTGTCGCTC ACTGGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505543	CHEV_8_13253677	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220135410					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13303677 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Rr175514	regulatory region 175514	324 bp proximal
Rr186316	regulatory region 186316	within coordinates
Tssr80430	transcription start site region 80430	355 bp downstream
Tssr80431	transcription start site region 80431	391 bp downstream
Tssr80432	transcription start site region 80432	427 bp downstream
Tssr80433	transcription start site region 80433	444 bp downstream
Tssr80434	transcription start site region 80434	477 bp downstream
Tssr80435	transcription start site region 80435	499 bp downstream
Tssr80436	transcription start site region 80436	569 bp downstream