rs220140142 SNP Detail

Summary

• ID
  rs220140142
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGACAC TCTTCCCACC
  ATGCCATGCC GTAAGGGCAT ATGGTTGCTA TTGTTAAGTC TTAAGAGTTC AGCCCCTCTG
  GGACACTGGC CCGTGAGCCA CACGCCCAGC TGGGGCCCCA CCAAGGCGAC TCGCCCTTCA
  CTTTAGTGAT GGCTCTAGGC AGTCAAGGCT AGCCACCTGG AGCAAGACCA GGGGCCTGGG
  A
  GAAGGAGGAG TTTGGCCACA CAGCAGAGGC CCAAGGTTCC ACCACCGCCC AACTTAGAAA
  CCAGTCCTCT TTAGACAATT CCATCAGCTC AGCCAGTATC CCGGATCCGG GAGACCGAGT
  CCACGCCGTC CTCAAGGCCC CCCCCCCCCC CGGCACCTCC AGAAACCACC TAGTCCAGGA
  AGCAGCTTCC GGGCCCAGGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170079	CHEV_12_113911585	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220140142					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639808 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			within coordinates
Gm30150	predicted gene, 30150			1114 bp upstream
Rr473550	regulatory region 473550			1821 bp distal
Rr473551	regulatory region 473551			1320 bp distal
Rr473552	regulatory region 473552			445 bp distal
Rr473553	regulatory region 473553			within coordinates
Rr473554	regulatory region 473554			892 bp proximal
Rr473555	regulatory region 473555			1005 bp proximal
Rr473556	regulatory region 473556			1048 bp proximal
Rr473557	regulatory region 473557			1608 bp proximal
Tssr115391	transcription start site region 115391			1038 bp upstream
Tssr117875	transcription start site region 117875			1797 bp upstream
Tssr117876	transcription start site region 117876			1330 bp upstream
Tssr117877	transcription start site region 117877			642 bp downstream
Tssr117878	transcription start site region 117878			701 bp downstream
Tssr117879	transcription start site region 117879			819 bp downstream
Tssr117880	transcription start site region 117880			969 bp downstream
Tssr117881	transcription start site region 117881			1000 bp downstream
Tssr117882	transcription start site region 117882			1379 bp downstream
Tssr117883	transcription start site region 117883			1400 bp downstream
Tssr117884	transcription start site region 117884			1452 bp downstream