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rs220140142 SNP Detail
Summary
  • ID
    rs220140142
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr12:112639808 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATGGGACAC TCTTCCCACC
    ATGCCATGCC GTAAGGGCAT ATGGTTGCTA TTGTTAAGTC TTAAGAGTTC AGCCCCTCTG
    GGACACTGGC CCGTGAGCCA CACGCCCAGC TGGGGCCCCA CCAAGGCGAC TCGCCCTTCA
    CTTTAGTGAT GGCTCTAGGC AGTCAAGGCT AGCCACCTGG AGCAAGACCA GGGGCCTGGG
    A
    GAAGGAGGAG TTTGGCCACA CAGCAGAGGC CCAAGGTTCC ACCACCGCCC AACTTAGAAA
    CCAGTCCTCT TTAGACAATT CCATCAGCTC AGCCAGTATC CCGGATCCGG GAGACCGAGT
    CCACGCCGTC CTCAAGGCCC CCCCCCCCCC CGGCACCTCC AGAAACCACC TAGTCCAGGA
    AGCAGCTTCC GGGCCCAGGA                                            
    
    A = A
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324170079 CHEV_12_113911585 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs220140142 SNP A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:112639808 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1 thymoma viral proto-oncogene 1 within coordinates
Cpgi5173 CpG island 5173 within coordinates
Gm30150 predicted gene, 30150 1114 bp upstream
Tssr115391 transcription start site region 115391 1038 bp upstream
Tssr117875 transcription start site region 117875 1797 bp upstream
Tssr117876 transcription start site region 117876 1330 bp upstream
Tssr117877 transcription start site region 117877 642 bp downstream
Tssr117878 transcription start site region 117878 701 bp downstream
Tssr117879 transcription start site region 117879 819 bp downstream
Tssr117880 transcription start site region 117880 969 bp downstream
Tssr117881 transcription start site region 117881 1000 bp downstream
Tssr117882 transcription start site region 117882 1379 bp downstream
Tssr117883 transcription start site region 117883 1400 bp downstream
Tssr117884 transcription start site region 117884 1452 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory