rs220145235 SNP Detail

Summary

• ID
  rs220145235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21322371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTCATG TTGCTTATGT
  AGAATCCAAA AACCTTAGGC ATCCAAATAT CTCAGCTAAG AAAATAACTT TCTCCAAATG
  AAAAAAATTT CTAAAATAAC AAATGACGTC AGTTTAATAA CGACACTTGC TCTGGAGTTT
  TTGCTTAGAC TCTACATCCT CTCTGAACAG TAGAGAAATT GTTCCAGCAG TGAATGAACT
  R
  TATTTATCAG TCAGTGTAAG CACTAAAACA GAACCAAAGA CCTGGGGCTC CTCATGTAAG
  TCAGCCTGCA AAAACTTACG TGCAACAAGG AATCTTTAAC TTTCCCAGGC TTATTATATA
  ATAGAATGGC CAGTTATTTT TGACTTCCAC AGAAGATTAA CAAGGGGAGA AACGATCTTT
  AAATCTAGCA AAAACATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323594394	CHEV_11_21272374	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220145235					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21322371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	608 bp distal
Gm12043	predicted gene 12043	within coordinates
Rr402440	regulatory region 402440	933 bp downstream
Rr443564	regulatory region 443564	1905 bp distal
Rr443565	regulatory region 443565	1900 bp distal
Rr443566	regulatory region 443566	1404 bp distal
Rr443567	regulatory region 443567	1535 bp distal
Rr443568	regulatory region 443568	680 bp distal
Tssr3440	transcription start site region 3440	1593 bp upstream
Tssr3441	transcription start site region 3441	1565 bp upstream
Tssr3442	transcription start site region 3442	1345 bp downstream
Tssr100572	transcription start site region 100572	1634 bp downstream
Tssr107064	transcription start site region 107064	1886 bp upstream
Tssr107065	transcription start site region 107065	1788 bp upstream
Tssr107066	transcription start site region 107066	1715 bp upstream
Tssr107067	transcription start site region 107067	1698 bp upstream
Tssr107068	transcription start site region 107068	1682 bp upstream
Tssr107069	transcription start site region 107069	1150 bp upstream
Tssr107070	transcription start site region 107070	1095 bp upstream
Ugp2	UDP-glucose pyrophosphorylase 2	1170 bp upstream