rs220146425 SNP Detail

Summary

• ID
  rs220146425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGTTTA AGCAGGCTAG
  CATTGTAAGG AGGGGGGGGG GGGAAAGAGT AAAAAAAATC ATTTAAAATT TATTTTTGAA
  GTACTTTTAA AATGGCATAT TTTTAATACA GGCTTAAGCA TGGAGCTTAA GAAAGACAGA
  GAGGCATTCA AAAAGTTTAA CGTTTTCTTT CTGTACTGGA TATTGAAACT CTGGTCTCAT
  S
  CAAGGCCATA TCACTGAGCC AAATCCCCCT GCTTTCCAAT TTGCTTAAAA TTAGAAGTTG
  GGAAATACAT TTGTAAGCCC AACACTTGAA AGCCTGAGAC AGGAGGGTCA GCCTGGGCTA
  CACGGGGAAG GGTGGTTTCT TTTAAAAATT TAGATTAATA ATTAATATAG ATAAAACATA
  TTCTATTATT AATCTAGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391575918	MGP_WTSI_14_75529705	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220146425					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575918	MGP_WTSI_14_75529705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	623 bp proximal
Cpgi6737	CpG island 6737	1196 bp proximal
Gm62951	predicted gene, 62951	472 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1232 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	62 bp proximal
Tssr4477	transcription start site region 4477	729 bp downstream
Tssr126606	transcription start site region 126606	1209 bp upstream
Tssr126607	transcription start site region 126607	1328 bp upstream
Tssr126608	transcription start site region 126608	1375 bp upstream
Tssr126609	transcription start site region 126609	1634 bp upstream
Tssr126610	transcription start site region 126610	1686 bp upstream
Tssr129761	transcription start site region 129761	688 bp downstream
Tssr129762	transcription start site region 129762	710 bp downstream
Tssr129763	transcription start site region 129763	746 bp downstream
Tssr129764	transcription start site region 129764	1010 bp downstream
Tssr129765	transcription start site region 129765	1107 bp downstream
Tssr129766	transcription start site region 129766	1677 bp downstream
Tssr129767	transcription start site region 129767	1719 bp downstream