rs220149757 SNP Detail

Summary

• ID
  rs220149757
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78457945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGAGG AGGAGGAGGA
  GGAGGAGGAG GAGGAGGAAG AGTCAGGGAC AGATGCAGTA GAGCAAGCTG GTAGAAGTTT
  GGCAAGTCCA AACCTTCTCA CAGCATGGTG CAATCTAAGC TTTCAGGAAG CTGAGACAAA
  GGGATTGCTG GGAGCTTGAG TCCAGGATTC AGAGTGAGAG TTCCAAGGCA GCCAGAGCCA
  K
  CGAGCGATAC AGCAAGATCC TAGCTGGGAA ACCACTCCAA ACCGAAAATC CTACCTACAA
  ACTGTCGTAG GCTTCTTGCC GTTTTGATGA TATCAACTAC ACTCGCCTTG TGTTGGGCAT
  TTGTGTTTAT AAGTGTTTGG TTGGGTGTTT GTGTTTGCAG GTGTTTTGTT GGGCATTTGT
  GTTTTTAGTT GTTTATTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394657262	MGP_WTSI_15_78404175	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220149757					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394657262	MGP_WTSI_15_78404175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78457945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1712 bp distal
Gm36738	predicted gene, 36738	666 bp downstream
Rac2	Rac family small GTPase 2	962 bp upstream
Rr307919	regulatory region 307919	1056 bp proximal
Rr312023	regulatory region 312023	544 bp distal
Rr369961	regulatory region 369961	1938 bp downstream
Rr404481	regulatory region 404481	791 bp downstream
Tssr131969	transcription start site region 131969	1934 bp downstream
Tssr135251	transcription start site region 135251	1070 bp upstream
Tssr135252	transcription start site region 135252	1055 bp upstream
Tssr135253	transcription start site region 135253	995 bp upstream
Tssr135254	transcription start site region 135254	955 bp upstream
Tssr135255	transcription start site region 135255	541 bp upstream
Tssr135256	transcription start site region 135256	516 bp upstream