rs220150909 SNP Detail

Summary

• ID
  rs220150909
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112424980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC TCCACCAAGA ACAAACAGCC
  G
  GCACGCAGTC TGCGCTGGCG GCTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324528916	CHEV_13_113078654	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220150909					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112424980 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	5 bp upstream
Rr486330	regulatory region 486330	within coordinates
Rr486331	regulatory region 486331	385 bp proximal
Tssr121099	transcription start site region 121099	50 bp upstream
Tssr121100	transcription start site region 121100	70 bp upstream
Tssr121101	transcription start site region 121101	134 bp upstream
Tssr121102	transcription start site region 121102	344 bp upstream
Tssr124046	transcription start site region 124046	702 bp downstream