rs220154150 SNP Detail

Summary

• ID
  rs220154150
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAAATGG CTCAGTGCGC
  AAAGGGGCTT GCTGCCAAAT CTGATAACCT AAGTTCAGTT CCCGGAACCC ACATGGACTA
  TCTGTGCCAC GGCATGTATG AGACCGCGCG CGCGCGCGCA CACACACACA CACACACACA
  CGTAAAAACC ATCAAAAAGT AGTCATTCCC CTTACTTCTA AATGGACAGG ATGTATATAC
  M
  CACACCAAGT ATATATTACC AAATCCTAAG ATGTACCAAC TGCAGACTTG ACTTTTAACA
  CAAGAAGGCC ATGCAACCGA ATAGATGGCA CCAACACCAG ACAGATCAGA CTCCTTTAAG
  ACTGTTGTGA GGTCAGATAG CAAGTCCATT TCCAGTAAGC TAGAACTCTG ATCTTCCAAG
  TTAGGGTCCT GGGAAATGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513541	CHEV_10_121022443	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220154150					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	860 bp proximal
Rr402304	regulatory region 402304	485 bp upstream
Rr402305	regulatory region 402305	1339 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	1390 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	830 bp upstream
Tssr96044	transcription start site region 96044	866 bp upstream
Tssr99623	transcription start site region 99623	486 bp downstream
Tssr99624	transcription start site region 99624	514 bp downstream
Tssr99625	transcription start site region 99625	535 bp downstream
Tssr99626	transcription start site region 99626	1323 bp downstream
Tssr99627	transcription start site region 99627	1343 bp downstream
Tssr99628	transcription start site region 99628	1426 bp downstream
Tssr99629	transcription start site region 99629	1454 bp downstream
Tssr99630	transcription start site region 99630	1482 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1993 bp downstream