rs220154182 SNP Detail

Summary

• ID
  rs220154182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61678350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCC CCCGACGGAG GGGCTGTGCC
  Y
  GGGGGCCAGG CACCTGTTCG GCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741954	CHEV_1_61685765	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220154182					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61678350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi308	CpG island 308	within coordinates
Pard3b	par-3 family cell polarity regulator beta	within coordinates
Rr29520	regulatory region 29520	within coordinates
Tssr95	transcription start site region 95	268 bp downstream
Tssr6971	transcription start site region 6971	350 bp downstream
Tssr6972	transcription start site region 6972	300 bp downstream
Tssr6973	transcription start site region 6973	236 bp downstream
Tssr6974	transcription start site region 6974	178 bp downstream