rs220154796 SNP Detail

Summary

• ID
  rs220154796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143804533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTGTAA CCCAGACGTA
  TGGAAAGTGG AGGCAGGAGG ATCGGGACTT GAAGGGCAAG CCTGAGCTTC ATGTTGAGTT
  CCAGGGCAGT TTGAAGTACA TACGACTCTA TCTCGAACTA ACAAAAAAGG ATAATGACGG
  TGGAGCAGTG ACAGAGAATG TTTTAGGATG AGTGAGATCC TGGGTTTATC TTCCAGCCCC
  Y
  AAAACATACA TCCAAGGAGG TTTTAGCTGT ATACACAGAA TGCTTATAAG GTTACAGTAA
  AGCTAGAAAT GAGTATGTTG TAGTGGAGTT AGGAGTGTAC ACTAAATTCA GGGTTTTTTT
  TTTTTCTTCT CCATTTTCAT TTTTAAATCC TGCCTGTAAT AATTGACCAC AATGAGAAAT
  AAAAGTTGTT CATCGTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367023248	MGP_WTSI_5_144579647	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220154796					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367023248	MGP_WTSI_5_144579647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143804533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16998	CpG island 16998	466 bp distal
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	within coordinates
Rr399488	regulatory region 399488	1389 bp downstream
Rr399489	regulatory region 399489	919 bp downstream
Rr624298	regulatory region 624298	1569 bp distal
Rr624299	regulatory region 624299	980 bp distal
Rr624300	regulatory region 624300	within coordinates
Rr624301	regulatory region 624301	619 bp distal
Rr624302	regulatory region 624302	432 bp proximal
Tssr49676	transcription start site region 49676	960 bp downstream
Tssr49677	transcription start site region 49677	935 bp downstream
Tssr49678	transcription start site region 49678	913 bp downstream