rs220161744 SNP Detail

Summary

• ID
  rs220161744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82924148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGTATGT TGACCTAGTT CCGACTAATT
  GCTTCTTAAT ACATCATAGA TAAGTCATTT GCCTACTGTT TCTATTTAAC Ttgataatta
  ataatagaaa taataataat aattatgaca aCTTGGGGGG TCACTTTGAA CTGAGCTTTT
  Y
  TGTTTCTACC TCTTTTGTAG GGCAACTTCA AGTGATCCAT ATTATGCTTG GAAGAAAGAT
  GGTGTCCTCA GGGTCTGTGG TACCCAGAGC TCACTAATGT CTAAAGGAGG AACTAGAACT
  GGCTGGGGCC TCGCAGGTCC TATATTCTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323044205	CHEV_9_82935702	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220161744					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82924148 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Rr401563	regulatory region 401563	1722 bp upstream