rs220163435 SNP Detail

Summary

• ID
  rs220163435
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34487892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTTTGTG CCAAGTAAGG
  ACCAGGTACC TTTAGGGTGT CATAAGCCCT GGGTGACATC AGACCTGCTC CACGGATAAC
  ACCAGGCAGT GTGAAATTCA TTTGCAGTCT TTACCTAGAA AGTACAACTT TGAAATTGTA
  GTCAAAGTTC ATTGATAAAA GAGGGAGCCA CGTGCATGAT CAATACACGT TTTCTCGTAT
  K
  GCTGTGACAA TACAAGGACA GGGAACCCTA ACAAAGTAAT GTCAAATGCT GTGGAGTCCG
  TAACCACTTG CAAGCATTTG CTGCTTGCTG AGCACGTGTT GTTTGTGGCT CATTCTTGAC
  TCCTACAGCA CTGTCAAGTT CTGTATTCTG TGGGACAAAC TCTGGGCTTT GGAACTAGTA
  GAACTTTGGA GAGTTAAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320701757	CHEV_3_34332665	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220163435					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34487892 () rs orientation: forward

Symbol	Name	Function Class
Gm20515	predicted gene 20515	within coordinates
Rr575127	regulatory region 575127	1059 bp distal
Rr575128	regulatory region 575128	999 bp proximal
Rr575129	regulatory region 575129	1136 bp proximal