rs220166019 SNP Detail

Summary

• ID
  rs220166019
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121261316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCACATG CCCGCCTGTG
  GGCCTCTGGT ATCTGCCCTG TGGCCTTTCT GAGCTGTGGC TCTGTAATTT TCAGTTTTGT
  TTCTGGGGAG GGCCCGGGCG GTGGGGGGGG GGACTTGATG TGTGTCCAGT GGATGCTGCC
  CATACCTGTC CTGGTTCTGG CAGACCCTGC AGGTCCAGAA ACCCCTCCTG CCTGGGGTTT
  K
  GAGTTCATCG GTTTCTGAGG TCCAGGGCTT TTACAGAGGA AACCAGGCTT AGCTGGGCTG
  GGCTGAGGGA AATCCTGCTT CCTATTCTAG GTGGCCCAGC GTGGCAGAAC CCTAGCAAGG
  AAAGTTGGGT GCTCCTGTGT CCTAGACGGG CAAGCATCCT GAGCTAAGAG GTTCTGCTCA
  CCTTCCAGGA CCGTCCCTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376272859	MGP_WTSI_8_123058477	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220166019					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376272859	MGP_WTSI_8_123058477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121261316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21149	CpG island 21149	1495 bp distal
Cpgi21150	CpG island 21150	433 bp proximal
Gse1	genetic suppressor element 1, coiled-coil protein	within coordinates
Rr174679	regulatory region 174679	285 bp proximal
Rr186096	regulatory region 186096	715 bp distal
Rr186097	regulatory region 186097	within coordinates
Tssr79769	transcription start site region 79769	1146 bp upstream
Tssr79770	transcription start site region 79770	1212 bp upstream
Tssr79771	transcription start site region 79771	1982 bp upstream
Tssr83195	transcription start site region 83195	1939 bp upstream