rs220171326 SNP Detail

Summary

• ID
  rs220171326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23807501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGGGGGA GAGTACAAAA
  CATACTTATG GTGCAGACAT AAAAATGACT AATTTCCAAG AAACATATAA ATGCTGTTTT
  CAACGTCTTT GGAAATGAAG GTGGGATTTA CTTTGAGGAA TTTCTCTTGG GTCTTGCATA
  GTTCTTCTGA CATGTTTTAG GACTAAATTG TAATGTGGTA TATTAAAACT AGATAACTGA
  R
  CCATTGATCA AGAGAAACAC ACATGAGAAA TATAGCTCAG AACATCTCTA CTGCCTTCGT
  TACAGAATCC TAGCCCCGTT ACTGAACAGC TGTTCTCCAT ATATGGCTAC TCCTTATGGA
  AACATGGGAA TAATGTTTCG TGGATCTCCT CAGGGTAAAT GAGGGGTTAA GATTTAATCT
  TAGAATCATA TTTGAGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387986400	MGP_WTSI_13_23715387	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220171326					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387986400	MGP_WTSI_13_23715387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23807501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5368	CpG island 5368	774 bp distal
H1f4	H1.4 linker histone, cluster member	960 bp upstream
Rr475907	regulatory region 475907	1904 bp distal
Rr475908	regulatory region 475908	1336 bp distal
Rr475909	regulatory region 475909	470 bp distal
Tssr118843	transcription start site region 118843	1646 bp downstream
Tssr118844	transcription start site region 118844	1467 bp downstream
Tssr121729	transcription start site region 121729	1587 bp upstream
Tssr121730	transcription start site region 121730	1529 bp upstream
Tssr121731	transcription start site region 121731	1515 bp upstream
Tssr121732	transcription start site region 121732	1412 bp upstream
Tssr121733	transcription start site region 121733	955 bp upstream