rs220173427 SNP Detail

Summary

• ID
  rs220173427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65755909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTTTTG GAAATGCCAA
  GGCCTATTTC ATTCTGCATC TGAGGAGATG CGGGAACCTC TGCCGAACGC AGAGATGGTG
  AGGAGGGTCG ATGTGGCTAC AGGCTCATCC TCATCTCGGA GCTGGAAGCT CCATGGCCTG
  GGGTTTGAGG CTTCCAGCCG GCGCCACAAA CTTTGGGCCA ATCAGCGCGG CCCGGTGGCC
  W
  GGGCTCCCCA CCGCTCCGGC CGCGCCTGCC CCGGCCGAGG AGGGGCCTGG CCGCGGGGAG
  CCGAGGAGGG AGGTGGGGAT TCTGGGAGCC GAGCTCATTT CCTCCTCCCG GCCGCCCCAG
  GCCCGCACCC CATCTCCACG TGCGGCGCCT CCGGAGCGCG GCCGAGCCAC GGAGGATGCT
  GGGCATGTAC GTACCAGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809798	CHEV_6_65728919	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220173427					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65755909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	within coordinates
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	63 bp upstream
Rr631490	regulatory region 631490	within coordinates
Rr631491	regulatory region 631491	314 bp proximal
Tssr56854	transcription start site region 56854	69 bp upstream
Tssr61222	transcription start site region 61222	711 bp downstream
Tssr61223	transcription start site region 61223	764 bp downstream
Tssr61224	transcription start site region 61224	772 bp downstream
Tssr61225	transcription start site region 61225	789 bp downstream
Tssr61226	transcription start site region 61226	848 bp downstream