rs220174152 SNP Detail

Summary

• ID
  rs220174152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84626855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGGAGGG CTGCGGAGAC
  TAGTCCCCGG CGGGTAGTCC AGGCCAGGTT TTGCGCTTGT CCGCCGCCCC CCTCCCGGAG
  CCGGCGGGCC CGGCAGCGCC GAGAGCAGGC GGCTTGTCAT TGCTGGTGCC CCGCGCCCGC
  TCGCTCCGCG AGTCCTGCGG TGCCCACGGG CCCAGCCCCG CGCCCCCTGC TCCGGCCACC
  Y
  CGGGGGCGCA ACGCCGCCGC GCCTGCTTCC AGCTGTGTAG CTCCGGCCCC CTGCGGGCAG
  CGCGAGCGGT CGGCGCGGGA GCAGTCGGCG CTGCGACGCC CCCGCCCCGC CGTCTGCCGG
  AGACGCCCCG GCGGATGGGG CCGCGCGGGC CCAGGAGCGG CGCCGCCGGG CGGCGGGGGC
  CTGCGCGGCC GCCCGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375388201	MGP_WTSI_8_86424125	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220174152					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375388201	MGP_WTSI_8_86424125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84626855 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	within coordinates
Cpgi20662	CpG island 20662	within coordinates
Gm26721	predicted gene, 26721	499 bp upstream
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	257 bp downstream
Tssr78301	transcription start site region 78301	133 bp downstream
Tssr78302	transcription start site region 78302	116 bp downstream
Tssr78303	transcription start site region 78303	61 bp downstream
Tssr78304	transcription start site region 78304	221 bp upstream
Tssr78305	transcription start site region 78305	366 bp upstream
Tssr78306	transcription start site region 78306	394 bp upstream
Tssr78307	transcription start site region 78307	480 bp upstream