rs220177480 SNP Detail

Summary

• ID
  rs220177480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:124675886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCCCC GCTGTGGAGC
  GGACCCCGCT GGTCCCCGAA CCCCCACTTA CCGTGAGCTC ACCGAGCTGC GCCGGCCTGC
  GGGCGAGAAC AGCACGGGCG AGTTAACCGC AGATCCCAGA GACAGACCCC TCCTGCTCGC
  TCTAGGCGTG GACGTGGGCC CGATCCCGAC TAGCGGACCG CGTCGGGTCC CCGGCCCTGG
  R
  GTTCGCGGAG AGGAGACGCT CGGAAACATG TTTGCAGAGA GCGTGGAGGA AGCGGCACTC
  GCGGGCTAAT AGCGAGAACC TCGCGCGCCC GGAGCTTGAA CACCTGAGGG GCGGGAAGGC
  GCCTAGAGAT GACGTAAGGG GGCGCTCAGC GAGTAGGGAG GGGAAGGCGC ATGGCAATGA
  CGTCAAAGAT CGGCGCCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376354270	MGP_WTSI_8_126473047	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220177480					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376354270	MGP_WTSI_8_126473047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124675886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	within coordinates
Gm45890	predicted gene 45890	within coordinates
Nup133	nucleoporin 133	Coding-Synonymous
Rr672577	regulatory region 672577	347 bp distal
Rr672578	regulatory region 672578	108 bp proximal
Rr672579	regulatory region 672579	128 bp proximal
Rr672580	regulatory region 672580	296 bp proximal
Rr672581	regulatory region 672581	1153 bp proximal
Tssr80007	transcription start site region 80007	263 bp upstream
Tssr80008	transcription start site region 80008	299 bp upstream
Tssr83414	transcription start site region 83414	54 bp downstream