rs220177484 SNP Detail

Summary

• ID
  rs220177484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87343886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctggataaa tgacttaaca gttaaaaaag
  tgctgctctt ccagaggacc caggcttact cccaggatct acatagttat atagtcagac
  ccatctgtaa ctcaggttct ggggatccca cacccactct ggcctctgtg accagccaca
  Y
  atgtggtaca gagacattcc tataggcaaa acacccattc atacctaaaa aaaaTTTTTA
  ATGCTAAAAA AATACTGAAA ATTTGTCTCT GTTCTGTAAG TTTTTATGTT TAAAGTGCTC
  AACTAAAGAA TGCTATTTTT TTCTCAAGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829382	CHEV_1_89312739	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220177484					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87343886 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Gm55682	predicted gene, 55682	815 bp upstream