rs220182907 SNP Detail

Summary

• ID
  rs220182907
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGGGAA GGAGACGGAC
  TGAGGGCGGC AGGGAAGATA GAAACAAAAT GGGGAGATAT GTGTGTGGTA GTCAGAGGCT
  GAACAACAGG CAGGGCAGGG TAAATGCGAG ATCAGGGCCT GGGTACATCT ATGTGGTTGG
  GGGAAGAGCC GGAAGGAGGC GAATGTGGTC GACACTATGG CGAATGTGGA AGACAGTATG
  S
  GGAGTTCAGG TGAGGGAGAA GACGTTAAGA GCTCTCAATC ATTACCGAAA GCCAGTACTC
  CAGCTGCCTC TCAAAGTCAT GGAAGTTGTC AGTGACTATC GGTATAGTGG CCCTTTCCTT
  CCTCAGTTTA TCCTCAAAAT AAAAAAGGCC AGATTGAGTC TGATAGACAC AACAGACGTG
  TTCACTAAAT ACCCGCTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353647	CHEV_7_109397770	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220182907					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	386 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1725 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	822 bp proximal
Rr652564	regulatory region 652564	1665 bp proximal
Tssr2354	transcription start site region 2354	1003 bp upstream
Tssr68327	transcription start site region 68327	1498 bp downstream
Tssr68328	transcription start site region 68328	364 bp upstream
Tssr68329	transcription start site region 68329	446 bp upstream
Tssr68330	transcription start site region 68330	964 bp upstream
Tssr73939	transcription start site region 73939	106 bp downstream
Tssr73940	transcription start site region 73940	156 bp downstream
Tssr73941	transcription start site region 73941	198 bp downstream
Tssr73942	transcription start site region 73942	286 bp downstream
Tssr73943	transcription start site region 73943	819 bp downstream
Tssr73944	transcription start site region 73944	830 bp downstream
Tssr73945	transcription start site region 73945	871 bp downstream
Tssr73946	transcription start site region 73946	1067 bp downstream
Tssr73947	transcription start site region 73947	1210 bp downstream
Tssr73948	transcription start site region 73948	1235 bp downstream
Tssr73949	transcription start site region 73949	1271 bp downstream
Tssr73950	transcription start site region 73950	1320 bp downstream