rs220186742 SNP Detail

Summary

• ID
  rs220186742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100978308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGAATTG TGCCAGGATG
  CCAAGGCTGG CTAGCCTTGC TGATGGGTGG CCCTAGGACC TGACTGTACC GAGTTCTAAG
  ATGAGGTGGT GCCTTCTGAG GCATCCAGCT TGAAGGAATG TTAGTGTCTG CCTAGAGACA
  AAAGCCTTCC AGGGCCAGGA TGAGAGGAGA GCTTGCTCAT GCCTCATCGG GGATGCTCAG
  Y
  GTGCCGCTGA AGCCTTCCTG AGGCGCCACA GGCCAGCCCA GTATCAGGTG GTCCTGATTC
  TCAGGTGGCT GTGGGTCACA GTAAGGGCTC TGGTTAGCAG GTGAGGGGAG CCTAGTCGCT
  TCCCTCCTTC ACTTACCCCC TGTCCAGCGC CCAGGCAATG AAGTATCACT TTCCTTCCCT
  GAGCTAATTA TGGTCCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395190056	MGP_WTSI_15_100910858	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220186742					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395190056	MGP_WTSI_15_100910858	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100978308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	897 bp distal
Fignl2	fidgetin-like 2	1860 bp upstream
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	382 bp downstream
Rr509899	regulatory region 509899	1871 bp distal
Rr509900	regulatory region 509900	1370 bp distal
Rr509901	regulatory region 509901	1319 bp distal
Rr509902	regulatory region 509902	1419 bp proximal
Tssr136516	transcription start site region 136516	1914 bp upstream
Tssr136517	transcription start site region 136517	1597 bp upstream
Tssr136518	transcription start site region 136518	1495 bp upstream