rs220187985 SNP Detail

Summary

• ID
  rs220187985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93032143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCCCAC CCCATCCCCA
  GCTCCTCTTG TCATGCTTCT GCCTGGCCCC CAAGACTGCC TCTGTCATGG TCACTATTTA
  TTCTTGGTCC CTTTTTCTTT TTGTAAGAAA CAGTCACAAG AAAACAACAA CAACAACAAA
  AAACAACCAA TGAGAAACAA TCTGCGTGGT GTCCTGTTTT ATATTACAAA ATTTCTCTTA
  R
  TATAGAATAT AAAAAGGGGA GACTTGGGAG ATACAATGAT AAATTAGCTC TGTTTCCTAC
  TGCAAGGGAC ATTTACAAAT TCCAAAATAG ACTTTAGCAT ATGACGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATCAG AGTTCCTGGG GATGAAGGTG
  CTGGGTTCAG AACCCAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354849021	MGP_WTSI_2_93041955	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220187985					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354849021	MGP_WTSI_2_93041955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93032143 () rs orientation: forward

Symbol	Name	Function Class
Rr561119	regulatory region 561119	516 bp distal
Rr561120	regulatory region 561120	273 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	39 bp downstream
Tspan18	tetraspanin 18	mRNA-UTR
Tssr18986	transcription start site region 18986	1959 bp downstream
Tssr18987	transcription start site region 18987	1514 bp downstream
Tssr18988	transcription start site region 18988	1491 bp downstream
Tssr18989	transcription start site region 18989	183 bp downstream
Tssr25280	transcription start site region 25280	1491 bp downstream
Tssr25281	transcription start site region 25281	1520 bp downstream
Tssr25282	transcription start site region 25282	1539 bp downstream
Tssr25283	transcription start site region 25283	1641 bp downstream
Tssr25284	transcription start site region 25284	1856 bp downstream