rs220197801 SNP Detail

Summary

• ID
  rs220197801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12744557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGAAGT TGGCTACAGC
  TACTTCGGGA CCCGGGCGGT GGAACTGCAG AAAGGTCCCA CCTCCTTTCA ACCCCCGCCC
  CATTCCCTAG GGGACTGCGG TCACATTACC CAGACCGAAG CTTCAATAAT GCATGGGCTT
  ACCTGCTAGC CAAGTCCCAG AGGCCCCAAG GTTCCTCTGG GCGTGTTCGG GTGGTGGGGA
  K
  CTTGCCTTGG ACGTTACAAG AATTTTTTTT AAGTGAAACG TGGAAAGCCC GACAAGATCC
  AAAGGGGGGT GGGGGGGGGG GAGATCCAAA ATTGACACCC GATTGGAAAC GCCCCCTGAC
  TTGTGCAATC TTCCTGCCCG GTAGTTCCGC CAAAAACAAA ACAGTCCAAA CGCTAGCCTG
  GGGGCAGGCG CACGCAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379469245	MGP_WTSI_10_12588611	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220197801					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379469245	MGP_WTSI_10_12588611	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12744557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	1084 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	629 bp downstream
Tssr92368	transcription start site region 92368	381 bp downstream
Tssr92369	transcription start site region 92369	154 bp upstream
Tssr96723	transcription start site region 96723	626 bp upstream
Tssr96724	transcription start site region 96724	586 bp upstream
Tssr96725	transcription start site region 96725	509 bp upstream
Tssr96726	transcription start site region 96726	271 bp downstream
Tssr96727	transcription start site region 96727	331 bp downstream
Tssr96728	transcription start site region 96728	676 bp downstream
Tssr96729	transcription start site region 96729	817 bp downstream
Utrn	utrophin	within coordinates