rs220205871 SNP Detail

Summary

• ID
  rs220205871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126831338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCTGC TTTGGGATTA
  ACAGGACCAA CCAATTTTTT TTTTTAAGTT AGTTAGAATT TTTAAAATTT GGGGGGCACA
  TTGCACCAGT GCATGTGGAG GTCACAGGAC AACGTGCACT CTCCTTTCCA CCACACAGGT
  TCCCTGGAGA GAACTCAGGT TGTCAAGCTT GCGGACAATC CCCTTTTCCC ACTGAGGCAT
  R
  CCACTGGCCC AGTTCTCCAC GCCTTGTATG ATTTTTTTTA AAAAAACTGA CCGCACTCTA
  GCCGGGCGTG GTGGCGCACG CCTTTAATCC CAGCACTCGG GAGGCAGAGG CAGGTGGATT
  TCTGAGTTTG AGGCCAGCCT GGTCTACAAA GTGAGTTCCA GGACAGCCAG GGCTATACAG
  AGAAACCCGG TCTCGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083612	MGP_WTSI_7_134375680	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220205871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083612	MGP_WTSI_7_134375680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126831338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19733	CpG island 19733	569 bp proximal
Gm4532	predicted gene 4532	252 bp downstream
Rr166726	regulatory region 166726	within coordinates
Rr381454	regulatory region 381454	within coordinates
Septin1	septin 1	within coordinates
Tssr69182	transcription start site region 69182	718 bp upstream
Tssr69183	transcription start site region 69183	878 bp upstream
Tssr69184	transcription start site region 69184	1061 bp upstream
Tssr74974	transcription start site region 74974	465 bp downstream
Tssr74975	transcription start site region 74975	582 bp downstream
Tssr74976	transcription start site region 74976	724 bp downstream
Tssr74977	transcription start site region 74977	958 bp downstream
Zfp553	zinc finger protein 553	895 bp upstream