rs220208027 SNP Detail

Summary

• ID
  rs220208027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78457988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGACAGA TGCAGTAGAG
  CAAGCTGGTA GAAGTTTGGC AAGTCCAAAC CTTCTCACAG CATGGTGCAA TCTAAGCTTT
  CAGGAAGCTG AGACAAAGGG ATTGCTGGGA GCTTGAGTCC AGGATTCAGA GTGAGAGTTC
  CAAGGCAGCC AGAGCCATCG AGCGATACAG CAAGATCCTA GCTGGGAAAC CACTCCAAAC
  Y
  GAAAATCCTA CCTACAAACT GTCGTAGGCT TCTTGCCGTT TTGATGATAT CAACTACACT
  CGCCTTGTGT TGGGCATTTG TGTTTATAAG TGTTTGGTTG GGTGTTTGTG TTTGCAGGTG
  TTTTGTTGGG CATTTGTGTT TTTAGTTGTT TATTGGACTT TTGGGTTTCC TATTACACAA
  GTTACTATTT GTGTATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394657265	MGP_WTSI_15_78404218	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220208027					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394657265	MGP_WTSI_15_78404218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78457988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1755 bp distal
Gm36738	predicted gene, 36738	623 bp downstream
Rac2	Rac family small GTPase 2	1005 bp upstream
Rr307919	regulatory region 307919	1013 bp proximal
Rr312023	regulatory region 312023	587 bp distal
Rr369961	regulatory region 369961	1981 bp downstream
Rr404481	regulatory region 404481	834 bp downstream
Tssr131969	transcription start site region 131969	1977 bp downstream
Tssr135251	transcription start site region 135251	1113 bp upstream
Tssr135252	transcription start site region 135252	1098 bp upstream
Tssr135253	transcription start site region 135253	1038 bp upstream
Tssr135254	transcription start site region 135254	998 bp upstream
Tssr135255	transcription start site region 135255	584 bp upstream
Tssr135256	transcription start site region 135256	559 bp upstream