rs220213805 SNP Detail

Summary

• ID
  rs220213805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117642878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTGTTTTTT
  TGAGACAGGG TTCCTCTGTA TAGCCCCGGC TGTCCTGGAA CTCACTCTGT AGACCAGGCT
  GGCCTTGAAC TCAGAGGTCC ACCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGTTGTGT
  GCCACCACGC CTGGCTAGCA ATGGCTTCTT ATGTTTTAAC CTTGGGACTC TCCTTGTAGT
  Y
  TTTCATCCAT GTTAAACTCT TCGAGTATTT ACGTTGATTT ACATTTCTGT GGCTATTGGC
  TAAAACACCC ATTTATGGGC CAATCGAATT TGTTTTGCGT TTCTATTTTC TTATGCTCCC
  TTATGTGTAA GAGCGCGCTT TCCTGCATGT ACTCAATGTG TGTACCTGGG GCCCAAATGA
  GGCCAAAAGA TGTTAGGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499644	CHEV_10_117244029	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220213805					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117642878 () rs orientation: forward

Symbol	Name	Function Class
Gm67590	predicted gene, 67590	within coordinates
Rr218193	regulatory region 218193	1478 bp distal
Rr218194	regulatory region 218194	923 bp proximal
Rr218195	regulatory region 218195	1522 bp proximal
Rr221673	regulatory region 221673	498 bp distal
Rr225990	regulatory region 225990	1878 bp distal
Rr385360	regulatory region 385360	229 bp downstream
Rr402273	regulatory region 402273	1108 bp upstream