rs220215578 SNP Detail

Summary

• ID
  rs220215578
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145879302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC TGTGGATCCT GGAAATCAAA
  M
  TGAGGTCAGC AGGTTTTCCC AGCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322075156	CHEV_6_145882096	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220215578					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145879302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	456 bp proximal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	1764 bp proximal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	537 bp upstream
Tssr59565	transcription start site region 59565	561 bp upstream